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Usage

Pipeline can either be used via scripts located in the examples folder or solely via installation.

First, download the GitHub repository to use the example scripts and notebooks.

Second, install the package via pip.

There is a premade conda environment that can be installed as well, however all package dependencies are included in the installation.

Cloning through GitHub

We welcome users to directly download this package either as a zip or by cloning the repository.

To clone: git clone [repository url]

Package Installation (Pip)

Build conda environment

  • update dependencies in conda_env.yml file
  • run the following from the folder containing the .yml file
    • conda env create -f conda_env.yml
  • to add new dependencies, update conda_env.yml file
  • run the following from the folder containing the .yml file
    • conda env update -f conda_env.yml
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